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New posts in snakemake

snakemake: is there a way to specify an output directory for each rule?

snakemake

How to use expand in snakemake when some particular combinations of wildcards are not desired?

python wildcard python-itertools higher-order-functions snakemake

SLURM / Sbatch creates many small output files

slurm snakemake sbatch

How to prevent snakemake from deleting output folders from failed jobs?

snakemake

Snakemake slurm ouput file redirect to new directory

slurm snakemake sbatch

Implementation How to use expand in snakemake when some particular combinations of wildcards are not desired?

python wildcard snakemake

problem with snakemake submitting jobs with multiple wildcard on SGE

cluster-computing snakemake sungridengine

Snakemake: I keep getting The 'conda' command is not available in $PATH. when running on SGE cluster

conda snakemake environment-modules

Using wildcards in params

snakemake

R Draws Plots with Rectangles Instead of Text

r linux pipeline snakemake singularity-container

Snakemake wants to run job although output file already exists

python offline snakemake

Symlink (auto-generated) directories via Snakemake

python makefile directory symlink snakemake

How to get the basename of the wildcard values in the snakemake output rule?

wildcard snakemake

Snakemake how to execute downstream rules when an upstream rule fails

snakemake

Multiple inputs and outputs in a single rule Snakemake file

python-3.x snakemake

Snakemake + docker example, how to use volumes

docker snakemake singularity-container

snakemake - output one only file from multiple input files in one rule

snakemake
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