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New posts in bioinformatics
Map SNP IDs to genome coordinates
Nov 19, 2022
r
bioinformatics
bioconductor
genetics
genome
Remove line breaks in a FASTA file
Oct 27, 2019
unix
awk
newline
bioinformatics
fasta
Reverse complement of DNA strand using Python
Sep 22, 2022
python
list
bioinformatics
biopython
dna-sequence
A more complex version of "How can I tell if a string repeats itself in Python?"
Sep 08, 2019
python
string
pattern-matching
bioinformatics
Examples for Topological Sorting on Large DAGs
Oct 26, 2022
database
dataset
bioinformatics
directed-acyclic-graphs
topological-sort
Data structures for bioinformatics [closed]
Mar 10, 2018
data-structures
bioinformatics
SeqIO.parse on a fasta.gz
Apr 03, 2022
python
bioinformatics
biopython
gzip
How do I convert the three letter amino acid codes to one letter code with python or R?
Mar 31, 2022
python
r
bioinformatics
biopython
Longest repeated (k times) substring
Nov 10, 2022
python
algorithm
bioinformatics
longest-substring
Traceback in dynamic programming implementation of Needleman-Wunsch algorithm
Jun 17, 2022
python
algorithm
dynamic-programming
bioinformatics
Extract sample data from VCF files
Jun 07, 2021
r
bioinformatics
vcf-variant-call-format
What is the best bioinformatics book for a computer scientist? [closed]
Feb 17, 2014
computer-science
bioinformatics
Find the intersection of overlapping ranges in two tables using data.table function foverlaps
Mar 15, 2019
r
data.table
bioinformatics
Fastest way to extract uppercase characters in Java
Oct 22, 2022
java
performance
extract
bioinformatics
uppercase
Using the reserved word "class" as field name in Django and Django REST Framework
Oct 05, 2022
python
django
python-3.x
django-rest-framework
bioinformatics
Faster way to split a string and count characters using R?
Nov 22, 2017
optimization
string
r
bioinformatics
Finding overlap in ranges with R
Oct 24, 2022
r
bioinformatics
biopython no module named Bio
Sep 20, 2022
python
python-3.x
pip
bioinformatics
biopython
How to plot positions along a chromosome graphic
Sep 19, 2022
r
plot
bioinformatics
genetics
How to cache reads?
Aug 20, 2019
python
caching
bioinformatics
samtools
pysam
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