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New posts in bioinformatics
Using Bio.SeqIO to write single-line FASTA
Feb 15, 2023
python
python-2.7
bioinformatics
biopython
fasta
Plotting the score matrix from a Needleman-Wunsch pairwise sequence alignment in matplotlib
Feb 06, 2023
python
matplotlib
bioinformatics
biopython
Building a workflow with dynamic input without using deprecated dynamic API
Jan 29, 2023
bioinformatics
snakemake
Computing the combinations for presence or absence of a factor in a table
Jan 18, 2023
python
perl
bash
bioinformatics
Merge overlapping numeric ranges into continuous ranges
Jan 13, 2023
python
algorithm
bioinformatics
Make a list in python from a FASTA text file
Jan 04, 2023
python
bioinformatics
biopython
fasta
Fastest way to count instances of substrings in string Python3.6
Jan 04, 2023
python
string
performance
bioinformatics
biopython
Removing lines with repetitive values in last
Dec 29, 2022
python
perl
bash
awk
bioinformatics
How to convert vcf file to ped file using plink?
Dec 26, 2022
bioinformatics
vcftools
vcf-variant-call-format
Create a dataframe from a dataframe
Dec 25, 2022
r
dataframe
bioinformatics
reshape
create-table
TypeError: expected bytes, str found in custom python function
Dec 20, 2022
python
function
encoding
error-handling
bioinformatics
How do I decide which way to backtrack in the Smith–Waterman algorithm?
Dec 18, 2022
python
numpy
bioinformatics
How to swap three by three elements in a prolog list?
Dec 15, 2022
list
prolog
bioinformatics
swap
dcg
How to speed-up sed that uses Regex on very large single cell BAM file
Dec 16, 2022
linux
unix
awk
sed
bioinformatics
Frequent words in Python
Dec 13, 2022
python
bioinformatics
string-matching
The which function in R is not giving the desired output
Dec 08, 2022
r
bioinformatics
Parallel running of several jobs in a python script
Dec 07, 2022
python
parallel-processing
bioinformatics
How to handle multiple optimal edit paths implementing Needleman-Wunsche algorithm?
Nov 26, 2022
bioinformatics
sequence-alignment
SMILES from graph
Feb 05, 2023
python
bioinformatics
rdkit
cheminformatics
Why can't python find some modules when I'm running CGI scripts from the web?
Feb 05, 2023
python
cgi
bioinformatics
biopython
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