What is the meaning of these Windows Environment variables:
Who set them? When? Who use them? For doing what?
How the configuration of the samba server modify these variables?
USERPROFILE is set by userenv!LoadUserProfileW which is called when, well, loading the user's profile (the HKEY_USERS\<sid> hive).
/noprofile for runas) then the process is run in the Default User profile which still has this variable set - since the moment it was loaded at system's startup.HOMEDRIVE, HOMEPATH and HOMESHARE (as well as several other variables) are set by shell32!RegenerateUserEnvironment which is called on Explorer initialization1. They are placed in the (volatile) HKCU\Volatile Environment key which, being volatile, persists until the profile's unload.
USERPROFILE nowadays.HOMEPATH to be set, SYSTEM must have permissions for the profile's directory (they are initially set, of course, but may vanish when e.g. playing with Cygwin's chmod).1The code also sets a few variables that are already set by userenv. This suggests that this is an older code that persists since NT4 days. Difference between profile and home path - Server Fault confirms that.
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