They seem to be the same.
Internally jQuery just maps its own $.isArray to the native Array.isArray.*
After further investigation I found this commit where they replaced jQuery.isArray with the native Array.isArray().
They also announced here that $.isArray is officially deprecated.
The function still exist for backward compatibility but I guess it will be dropped completly in a future jQuery release.
There is no difference.
jQuery just prototype the JavaScript's native isArray function.
something that will look like-
jQuery.prototype.isArray = Array.isArray;
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