Assume the following class:
public class MyEntity
{
    public string FirstName;
    public string LastName;
}
I would like to use AutoMapper to compare two MyEntity objects, and create a new MyEntity object that contains only the differences between the two objects. Properties that are equal will result a null value in the new object.
for example, the I would like the following lines:
MyEntity entity1 = new MyEntity() { FirstName = "Jon", LastName = "Doh" };
MyEntity entity2 = new MyEntity() { FirstName = "Jon", LastName = "The Great" };
MyEntity diffEntity = Mapper.Map...;   // Compare the two objects using AutoMapper
to result with the following diffEntity values:
{
    FirstName: null,
    LastName: "The Great"
}
The final goal is to enable a client mobile application to send a DTO that contains only the changes made to an entity, to a ASP.NET MVC WebAPI server application.
Please assume that I have many classes of entities which requires the same handling, and I would like to avoid manually writing property names for each comparison.
Is it possible?
This is possible, you would want to create a custom Converter. Perhaps using the Expression Trees from this question: Hows to quick check if data transfer two objects have equal properties in C#?
public class DifferenceConverter<T> : ITypeConverter<T, T>
{
  public T Convert(ResolutionContext context)
  {
  // Code to check each property to see if different, could be done with
  // Reflection or by writing some Dynamic IL.
  // Personally I would use Reflection to generate (then cache) an Expression tree  
  // to compare each object at native speeds..
  return differenceObject;
  }
}
Once you have this you can attach it to you AutoMapper using the following method:
AutoMapper.Mapper.CreateMap<MyEntity, MyEntity>().ConvertUsing<DifferenceConverter<MyEntity>>();
Then you can use the usual pattern:
var originalObject = new MyEntity();
var modifiedObject = new MyEntity();
Mapper.Map(originalObject , modifiedObject);
// Now modifiedObject contains the differences.
myService.Post(modifiedObject);
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