I have a tibble. I need to add a new column in which each value is a function of the corresponding values in several other columns. Here is an example:
library(tibble)
tmp <- tribble(
~ID, ~x1, ~x2,
1, "200", NA,
2, "300", "400")
I want to add a new column, new, that is TRUE if and only if any of the corresponding values in x1 and x2 start with "3". That is, I want
# A tibble: 2 x 4
ID x1 x2 new
<dbl> <chr> <chr> <lgl>
1 1 200 <NA> NA
2 2 300 400 TRUE
In this example, new is a function of only x1 and x2. But there may be many of these "x" columns, and I won't always be able to write out their names. They will always start with "x", though, so this is one solution:
tmp %>%
mutate(
new = select(., starts_with("x")) %>%
apply(., 1, function (x) any(substr(x, 1, 1)=="3"))
)
But this solution is pretty clunky. Is there a more elegant way?
There are many related questions on Stack Overflow, but they generally speak to cases in which (a) the names of all columns in the original dataset are known and can be written out, or (b) the new variable is a function of all other columns in the data frame. (Here is one example.)
If you want to stay in tidyverse, we can use pmap for a row-wise operation :
library(dplyr)
library(purrr)
tmp %>%
mutate(new = pmap_lgl(select(., starts_with('x')),
~any(startsWith(c(...), '3'), na.rm = TRUE)))
# ID x1 x2 new
# <dbl> <chr> <chr> <lgl>
#1 1 200 NA FALSE
#2 2 300 400 TRUE
In base R, we can use row-wise apply
tmp$new <- apply(tmp[grep('x', names(tmp))], 1, function(x)
any(startsWith(x, '3'), na.rm = TRUE))
Here is an option with pivot_longer where we reshape into 'long' format with pivot_longer, do a group by 'ID' to check if there are any value that have 3 as the first digit and do a join with the original dataset
library(dplyr)
library(tidyr)
library(stringr)
tmp %>%
pivot_longer(cols = -ID, values_drop_na = TRUE) %>%
group_by(ID) %>%
summarise(new = any(str_detect(value, '^3'))) %>%
right_join(tmp)
# A tibble: 2 x 4
# ID new x1 x2
#* <dbl> <lgl> <chr> <chr>
#1 1 FALSE 200 <NA>
#2 2 TRUE 300 400
Or using base R, we can concatenate by row with paste and use grepl. Should be more efficient
grepl("(^|,)3", do.call(paste, c(tmp[-1], sep=",")))
#[1] FALSE TRUE
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