I just started working with R and would like to get a Nonlinear least square fit nls(...) to the formula y=A(1-exp(-bL))+R. I define my function g by
> g<-function(x,y,A,b,R) {
y~A(1-exp(-bx))+R
}
and want to perform nls by
>nls((y~g(x,y,A,b,R)),data=Data, start=list(A=-2,b=0,R=-5))
And I end with the following error message.
>Error in lhs - rhs : non-numeric argument to binary operator
I guess it's just a stupid basic mistake by another beginner, but I'd be extremely glad if anyone could help me out.
Next question would be, whether I can implement the fitted curve into my graph
>plot(x,y,main="VI.20.29")
Thanks to everyone taking time to read and hopefully answer my question!
Detailed information: I have a table with the x values (Light.intensity) and y values (e.g. VI.20.29)
> photo.data<-read.csv("C:/X/Y/Z.csv", header=T)
> names(photo.data)
[1] "Light.intensity" "SR.8.6" "SR.8.7"
[4] "SR.8.18" "SR.8.20" "VI.20.1"
[7] "VI.20.5" "VI.20.20" "VI.20.29"
[10] "DP.19.1" "DP.19.15" "DP.19.33"
[13] "DP.19.99"
> x<-photo.data$Light.intensity
> x
[1] 0 50 100 200 400 700 1000 1500 2000
> y<-photo.data$VI.20.29
> y
[1] -2.76 -2.26 -1.72 -1.09 0.18 0.66 1.47 1.48 1.63
> plot(x,y,main="VI.20.29")
> Data<-data.frame(x,y)
> Data
x y
1 0 -2.76
2 50 -2.26
3 100 -1.72
4 200 -1.09
5 400 0.18
6 700 0.66
7 1000 1.47
8 1500 1.48
9 2000 1.63
> g<-function(x,y,A,b,R) {
+ y~A(1-exp(-bx))+R
+ }
> nls((y~g(x,y,A,b,R)),data=Data, start=list(A=-2,b=0,R=-5))
Error in lhs - rhs : non-numeric argument to binary operator
The problem is that you're calling a function within a function. You're saying y~g(...), when the function g(...) itself calls y~(other variables). It's kind of 'double counting' in a way.
Just do:
nls(y~A*(1-exp(-b*x))+R, data=Data, start=list(A=-2,b=0,R=-5))
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