I have the following dataframe:
fruits={'fruit':['apple1','apple2','banana1','banan2','peach1','peach2'],'1':[0,0,0,1,0,1],'2':[1,1,0,1,1,1],'3':[1,1,1,1,0,0],'4':[0,1,1,1,1,1]}
df_fruits=pd.DataFrame(data=fruits)
df_fruits=df_fruits.set_index('fruit')
>>> 1 2 3 4
fruit
apple1 0 1 1 0
apple2 0 1 1 1
banana1 0 0 1 1
banan2 1 1 1 1
peach1 0 1 0 1
peach2 1 1 0 1
I'm Trying to create some kind of heatmap so if value is 1 it will get color and if is zero will get color grey.In addition to that, and here is the problem, I want to give all the fruits with number one color blue and all the fruits with number two color green. I have tried to use the script as mentioned here but I get white lines on the cells in undesired locations that divide each row into two:
N_communities = df_fruits.index.size
N_cols = df_fruits.columns.size
cmaps = ['Blues','Greens','Blues','Greens','Blues','Greens','Blues','Greens','Blues','Greens','Blues','Greens','Blues','Greens','Blues','Greens','Blues','Greens','Blues','Greens','Blues','Greens','Blues','Greens','Blues','Greens','Blues','Greens','Blues','Greens']
fig, ax = plt.subplots(figsize=(10,8))
for i,((idx,row),cmap) in enumerate(zip(df_fruits.iterrows(), cmaps)):
ax.imshow(np.vstack([row.values, row.values]), aspect='equal', extent=[-0.5,N_cols-0.5,i,i+1], cmap=cmap)
for j,val in enumerate(row.values):
vmin, vmax = row.agg(['min','max'])
vmid = (vmax-vmin)/2
#if not np.isnan(val):
#ax.annotate(val, xy=(j,i+0.5), ha='center', va='center', color='black' if (val<=vmid or vmin==vmax) else 'white')
ax.set_ylim(0,N_communities)
ax.set_xticks(range(N_cols))
ax.set_xticklabels(df_fruits.columns, rotation=90, ha='center')
ax.set_yticks(0.5+np.arange(N_communities))
ax.set_yticklabels(df_fruits.index)
ax.set_ylabel('Index')
ax.hlines([2,4],color="black" ,*ax.get_xlim())
ax.invert_yaxis()
fig.tight_layout()
As you can see, it looks like apple 1 has two rows and apple 2 has two rows and etc., while I want to have one row per each. I have tried to play with the extent but could not ger rid of those lines.
My end goal - to have one rows in the heatmap for each row in the dataframe, when fruit finishes with 1 are blue, fruits finishes with 2 are green (only if value is 1) . if value is zero it will be grey.
Edit:
I have used the the ax.grid(False) as suggested but is still not goood as the lines dissapear. also I found out that the plotting is wrong:
as you can see, the row "banana2" suppose to get green color but is white.
You can use the mask
option of sns.heatmap
:
mask
: If passed, data will not be shown in cells wheremask
isTrue
. Cells with missing values are automatically masked.
So, to plot the blue fruit1 squares, mask
out the fruit2 values and vice versa.
The fruit1/fruit2 heatmaps can be plotted together by saving the axes handle ax
and reusing it with ax=ax
:
import pandas as pd
import seaborn as sns
fruits = {'fruit':['apple1','apple2','banana1','banana2','peach1','peach2'],'1':[0,0,0,1,0,1],'2':[1,1,0,1,1,1],'3':[1,1,1,1,0,0],'4':[0,1,1,1,1,1]}
df_fruits = pd.DataFrame(data=fruits)
df_fruits = df_fruits.set_index('fruit')
# *** this line is needed for seaborn 0.10.1 (not needed for 0.11.1) ***
df_fruits = df_fruits.astype('float')
# common settings: linewidths for grid lines, hide colorbar, set square aspect
kwargs = dict(linewidths=1, cbar=False, square=True)
# plot initial gray squares and save heatmap handle as ax
ax = sns.heatmap(df_fruits, cmap='Greys_r', alpha=0.2, **kwargs)
# iterate ending:cmap pairs
cmaps = {'1': 'Blues_r', '2': 'Greens_r'}
for ending, cmap in cmaps.items():
# create mask for given fruit ending
mask = df_fruits.apply(
lambda x: x if x.name.endswith(ending) else 0,
result_type='broadcast',
axis=1,
).eq(0)
# plot masked heatmap on reusable ax
sns.heatmap(df_fruits, mask=mask, cmap=cmap, ax=ax, **kwargs)
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