I have a response from a 3-rd party web service. I load an XmlDocument with that response.
  string txt = readStream.ReadToEnd();
  response = new XmlDocument();
  response.PreserveWhitespace = true;
  response.LoadXml(txt);   
  return response;
Now I would like to verify that the respones is signed using the certificate. I have a VerifyXmlDoc(XmlDocument xmlDoc) method which I have found on msdn.
I know that the message is correct.
    public bool VerifyXmlDoc(XmlDocument xmlDoc)
    {
        SignedXml signed = new SignedXml(xmlDoc);
        XmlNodeList signatureNodeList = xmlDoc.GetElementsByTagName("Signature");
        signed.LoadXml((XmlElement)signatureNodeList[0]);
        X509Certificate2 serviceCertificate = null;
        foreach (KeyInfoClause clause in signed.KeyInfo)
        {
            if (clause is KeyInfoX509Data)
            {
                if (((KeyInfoX509Data)clause).Certificates.Count > 0)
                {
                    serviceCertificate = (X509Certificate2)((KeyInfoX509Data)clause).Certificates[0];
                }
            }
        }
        bool result = signed.CheckSignature(serviceCertificate, true);
        return result;
    }
If I set target framework of my project to .NET 3.5 or .NET 3, or .NET 2 it works great. Result is true. But if I change target framework to .NET 4 result is false. (And I have to use .NET 4)
Any ideas on how to solve this problem?
This is a known issue. The Canonicalization implementation between .NET 3.5 and .NET 4.0 has changed.
I don't know if this works on all XML signatures but the following works from the testing that I've done.
Add the following C14N Transform class to your project:
public class MyXmlDsigC14NTransform: XmlDsigC14NTransform {
  static XmlDocument _document;
  public static XmlDocument document {
    set {
      _document = value;
    }
  }
  public MyXmlDsigC14NTransform() {}
  public override Object GetOutput() {
    return base.GetOutput();
  }
  public override void LoadInnerXml(XmlNodeList nodeList) {
    base.LoadInnerXml(nodeList);
  }
  protected override XmlNodeList GetInnerXml() {
    XmlNodeList nodeList = base.GetInnerXml();
    return nodeList;
  }
  public XmlElement GetXml() {
    return base.GetXml();
  }
  public override void LoadInput(Object obj) {
    int n;
    bool fDefaultNS = true;
    XmlElement element = ((XmlDocument) obj).DocumentElement;
    if (element.Name.Contains("SignedInfo")) {
      XmlNodeList DigestValue = element.GetElementsByTagName("DigestValue", element.NamespaceURI);
      string strHash = DigestValue[0].InnerText;
      XmlNodeList nodeList = _document.GetElementsByTagName(element.Name);
      for (n = 0; n < nodeList.Count; n++) {
        XmlNodeList DigestValue2 = ((XmlElement) nodeList[n]).GetElementsByTagName("DigestValue", ((XmlElement) nodeList[n]).NamespaceURI);
        string strHash2 = DigestValue2[0].InnerText;
        if (strHash == strHash2) break;
      }
      XmlNode node = nodeList[n];
      while (node.ParentNode != null) {
        XmlAttributeCollection attrColl = node.ParentNode.Attributes;
        if (attrColl != null) {
          for (n = 0; n < attrColl.Count; n++) {
            XmlAttribute attr = attrColl[n];
            if (attr.Prefix == "xmlns") {
              element.SetAttribute(attr.Name, attr.Value);
            } else if (attr.Name == "xmlns") {
              if (fDefaultNS) {
                element.SetAttribute(attr.Name, attr.Value);
                fDefaultNS = false;
              }
            }
          }
        }
        node = node.ParentNode;
      }
    }
    base.LoadInput(obj);
  }
}Register the class using the CryptoConfig.AddAlgorithm method.
CryptoConfig.AddAlgorithm(typeof(MyXmlDsigC14NTransform), "http://www.w3.org/TR/2001/REC-xml-c14n-20010315"); 
var message = new XmlDocument();
message.PreserveWhitespace = true;
message.Load("XmlSig.xml");
MyXmlDsigC14NTransform.document = message; // The transform class needs the xml document
// Validate signature as normal.  That should do it.
Try explicitly setting the Canonicalization method for the SignedInfo property of the SignedXml class.. It appears there has been a change in default behaviour here between .Net 2.0 and .Net 4.0
signed.SignedInfo.CanonicalizationMethod = Signed.XmlDsigExcC14NTransformUrl;
Reference:
This answer
I had the same problem but none of those answers helped me. In this case it works or not depending on the operative system I used, not on the .Net version.
I've enabled the SignedXML log by adding this code in the app.config to see what happened behind:
<system.diagnostics>
        <sources>
            <source name="System.Security.Cryptography.Xml.SignedXml" switchName="XmlDsigLogSwitch">
                <listeners>
                    <add name="logFile" />
                </listeners>
            </source>
        </sources>
        <switches>
            <add name="XmlDsigLogSwitch" value="Verbose" />
        </switches>
        <sharedListeners>
            <add name="logFile" type="System.Diagnostics.TextWriterTraceListener" initializeData="XmlDsigLog.txt"/>
        </sharedListeners>
        <trace autoflush="true">
            <listeners>
                <add name="logFile" />
            </listeners>
        </trace>
    </system.diagnostics>
It wrote this particular line:
System.Security.Cryptography.Xml.SignedXml Information: 17 : [SignedXml#033ec00f, UnsafeTransformMethod] Canonicalization method "http://www.w3.org/TR/1999/REC-xpath-19991116" is not on the safe list. Safe canonicalization methods are: "http://www.w3.org/TR/2001/REC-xml-c14n-20010315", "http://www.w3.org/TR/2001/REC-xml-c14n-20010315#WithComments", "http://www.w3.org/2001/10/xml-exc-c14n#", "http://www.w3.org/2001/10/xml-exc-c14n#WithComments", "http://www.w3.org/2000/09/xmldsig#enveloped-signature", "http://www.w3.org/2000/09/xmldsig#base64", "urn:mpeg:mpeg21:2003:01-REL-R-NS:licenseTransform", "http://www.w3.org/2002/07/decrypt#XML".
I found this Microsoft Support article which tries to fix an error introduced by the security update 3141780: https://support.microsoft.com/en-us/kb/3148821
Into that article, in Scenario 2 section, there are 2 solutions, I fixed the problem applying the registry key related to the XPath Transform Method: HKEY_LOCAL_MACHINE\SOFTWARE\Microsoft.NETFramework\Security\SafeTransformMethods@XmlDsigXPathTransform=http://www.w3.org/TR/1999/REC-xpath-19991116
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