Using git, we can git diff --check, which would
-- warn if changes introduce trailing whitespace or space/tab indents
Can I configure IntelliJ to only detect change if it does not begin and end with whitespace modifications? (like formatting)
In other words, when i click this icon, i only want to see changes made to my code, excluding formatting and other white space changes

As noted above:
IMO, IDEA-75868 should cover this case. If not, submit a new request.
This feature is not yet available, but is being tracked.
References
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