I want to use Prophecy ("phpspec/prophecy-phpunit") for the first time to create unit tests for my classes. I want to test a function that calls another function in the same service, here's the code:
class UserManager
{
    private $em;
    private $passwordHelper;
    public function __construct(\Doctrine\ORM\EntityManager $em, \MainBundle\Helper\PasswordHelper $passwordHelper)
     {
         $this->em = $em;
         $this->passwordHelper = $passwordHelper;
     }
     public function getUserForLdapLogin($ldapUser)
     {
          $dbUser = $this
              ->em
              ->getRepository('MainBundle:User')
              ->findOneBy(array('username' => $ldapUser->getUsername()));
         return (!$dbUser) ?
              $this->createUserFromLdap($ldapUser) :
              $this->updateUserFromLdap($ldapUser, $dbUser);
     }
First problem I had was that I was using findOneByUsername and Prophecy, as far as my knowledge goes, does not allow you to: mock magic methods (_call for EntityRepository), mock methods that do not exist, mock the class you are testing. If these are true I'm in a bit of a pickle, meaning I cannot test this function without testing the other functions in the class. 
So far, my test looks like this:
class UserManagerTest extends \Prophecy\PhpUnit\ProphecyTestCase
{
      public function testGetUserForLdapLoginWithNoUser()
      {
          $ldapUser = new LdapUser();
          $ldapUser->setUsername('username');
          $em = $this->prophesize('Doctrine\ORM\EntityManager');
          $passwordHelper = $this->prophesize('MainBundle\Helper\PasswordHelper');
          $repository = $this->prophesize('Doctrine\ORM\EntityRepository');
          $em->getRepository('MainBundle:User')->willReturn($repository);
          $repository->findOneBy(array('username' => 'username'))->willReturn(null);
          $em->getRepository('MainBundle:User')->shouldBeCalled();
          $repository->findOneBy(array('username' => 'username'))->shouldBeCalled();
          $service = $this->prophesize('MainBundle\Helper\UserManager')
            ->willBeConstructedWith(array($em->reveal(), $passwordHelper->reveal()));
          $service->reveal();
          $service->getUserForLdapLogin($ldapUser);
     }
}
And of course, the tests fail because the promises on $em, and the repository are not fulfilled. If I instantiate the class I am testing, the tests fail because the function then calls createUserFromLdap() on the same class and that is not tested. 
Any suggestions?
First problem :
Don't use magic, magic is evil. __call may lead to unpredictable behavior.
"the promises on $em, and the repository are not fulfilled" :
Don't make your code depend on Class but Interface. Then mock the Interface instead of Class ! You should mock ObjectManager instead of EntityManager. (don't forget to change the type of your parameters)
And the last point :
Before reveal.
$service->createUserFromLdap()
   ->shouldBeCalled()
   ->willReturn(null);
What you're trying to achieve is a partial mock, which is not supported by Prophecy. More about it here https://github.com/phpspec/prophecy/issues/101 and https://github.com/phpspec/prophecy/issues/61.
TL;DR; Design your classes with single responsibility in mind, so you don't have to mock other functionality.
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