So Bootstrap 4 Beta is out... yey! However Tether has been replaced by Popper.js for tooltip (and other features). I saw an error thrown in the console fast enough to advise me of the change to Popper.js:
Bootstrap dropdown require Popper.js
Seems easy enough, I went and updated my webpack.config.js (the entire config can be seen here) and Bootstrap then started working (the only change I did was to replace Tether with Popper):
plugins: [
new ProvidePlugin({
  'Promise': 'bluebird',
  '$': 'jquery',
  'jQuery': 'jquery',
  'window.jQuery': 'jquery',
  'window.$': 'jquery',
  Popper: 'popper.js' 
}),
I also did the import 'bootstrap' in my main.ts file. 
However I now have another problem (which I did not have with Tether), a new error is thrown in the console:
Uncaught TypeError: Popper is not a constructor
If I try to debug in Chrome, I do have Popper loaded as an Object (which is why Bootstrap stopped complaining) as you can see in the print screen below. 
Finally to include all my code. I use Bootstrap tooltip with a simple custom element built with Aurelia and TypeScript (which used to work with previous Bootstrap alpha 6 and Tether)
import {inject, customAttribute} from 'aurelia-framework';
import * as $ from 'jquery';
@customAttribute('bootstrap-tooltip')
@inject(Element)
export class BootstrapTooltip {
  element: HTMLElement;
  constructor(element: HTMLElement) {
    this.element = element;
  }
  bind() {
    $(this.element).tooltip();
  }
  unbind() {
    $(this.element).tooltip('dispose');
  }
}
Looks like I did not import Popper correctly, if so then what is the best way to achieve that with Webpack 3.x?
While browsing Bootstrap 4 documentation. I actually found a section about Webpack which explains how to install it correctly. Following the Bootstrap - installing with Webpack documentation, the answer is to simply modify the webpack.config.js with the following:
plugins: [
  // ...
  new webpack.ProvidePlugin({
    $: 'jquery',
    jQuery: 'jquery',
    'window.jQuery': 'jquery',
    Popper: ['popper.js', 'default']
  })
  // ...
]
and let's not forget to import it in the main.ts
import 'bootstrap';
and voilà! We are back in business :)
If you are using Webpack Do this:
window.$ = window.jQuery = require('jquery');
window.Popper = require('popper.js').default; // pay attention to "default"
require('bootstrap/dist/js/bootstrap');
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