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Adjusted odds ratios using the or_glm() function?

Tags:

r

adjustment

glm

I'm using or_glm() to calculate odds ratios, using this reproducible example:

    library(oddsratio)
    or_glm(data = data_glm, 
           model = glm(admit ~ gre + gpa + rank, 
                       data = data_glm, 
                       family = "binomial"), 
           incr = list(gre = 1, gpa = 1, rank = 1))

I have two questions:

  1. How can I also extract a p-value for each odds ratio?
  2. How can I get an odds ratio for "gre" adjusted for for "gpa" and "rank"?
like image 493
Wandering_geek Avatar asked Nov 18 '25 12:11

Wandering_geek


1 Answers

I would try as follows:

library(oddsratio)
library(mfx)

model = glm(admit ~ gre + gpa + rank, 
                   data = data_glm, 
                   family = "binomial")
logitor(admit ~ gre + gpa + rank,data=data_glm)
Call:
logitor(formula = admit ~ gre + gpa + rank, data = data_glm)

Odds Ratio:
      OddsRatio Std. Err.       z     P>|z|    
gre   1.0022670 0.0010965  2.0699 0.0384651 *  
gpa   2.2345448 0.7414651  2.4231 0.0153879 *  
rank2 0.5089310 0.1610714 -2.1342 0.0328288 *  
rank3 0.2617923 0.0903986 -3.8812 0.0001039 ***
rank4 0.2119375 0.0885542 -3.7131 0.0002047 ***
---
Signif. codes:  
0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

exp(coef(model))
(Intercept)         gre         gpa       rank2 
  0.0185001   1.0022670   2.2345448   0.5089310 
      rank3       rank4 
  0.2617923   0.2119375 

exp(cbind(OR=coef(model), confint(model)))
Waiting for profiling to be done...
                   OR       2.5 %    97.5 %
(Intercept) 0.0185001 0.001889165 0.1665354
gre         1.0022670 1.000137602 1.0044457
gpa         2.2345448 1.173858216 4.3238349
rank2       0.5089310 0.272289674 0.9448343
rank3       0.2617923 0.131641717 0.5115181
rank4       0.2119375 0.090715546 0.4706961
like image 128
user55546 Avatar answered Nov 21 '25 01:11

user55546



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