How can I have a Greek symbol within one of my facet labels?

Question

I'm trying to create a plot using ggplot2 (v. 2_2.2.1) facet_wrap, and I need to have a Greek symbol in only one facet label (out of five). I have tried to use code posted here on Stack Overflow:

• R Greek letters and normal letters for facet label in R facet grid
• How to add expressions to labels in facet_wrap?
• How can I use grid to edit a ggplot2 object to add math expressions to facet labels?

but without any success (getGrob is not working, and that's true also for the mf_labeller).

Can anyone help me with that?

Here is the example code:

df <- data.frame(genes = rep(c("BA","MLL","pos","neg","PMLalpha+"),5), value = sample(1:100, 25, replace=TRUE))
df$genes <- factor(df$genes, levels = c("BA","MLL","pos","neg","PMLalpha+"), ordered = TRUE)
ggplot(df,aes(x=genes, y=value)) + geom_boxplot()+ 
  facet_wrap(~genes, ncol = 5,scales = "free_x")+
  scale_x_discrete(name="",
               breaks = c("BA","MLL","pos","neg","PMLalpha+"),
               labels = c("BA","MLL","pos","neg",expression(paste("PML", alpha,"+"))))

I'm able to rename the x-axis tick, but I just can't do that within the facet labels.

Answer 1

Here is a trick that uses labeller=label_parsed.

First, define labels for df$genes that uses the expression to be parsed:

df$genes <- factor(df$genes, levels = c("BA","MLL","pos","neg","PMLalpha+"),
 ordered = TRUE, labels=c("BA","MLL","pos","neg",expression(paste("PML", alpha,"+"))))

Then use labeller=label_parsed in facet_wrap:

ggplot(df,aes(x=genes, y=value)) + geom_boxplot() + 
  facet_wrap(~genes, ncol = 5, scales = "free_x", labeller = label_parsed)

As you can see this messes with the x-axis labels, but you can fix it in scale_x_discrete as follows:

ggplot(df,aes(x=genes, y=value)) + geom_boxplot() + 
  facet_wrap(~genes, ncol = 5, scales = "free_x", labeller = label_parsed) +
  scale_x_discrete(name="",
               breaks = c("BA","MLL","pos","neg","paste(\"PML\", alpha, \"+\")"),
               labels = c("BA","MLL","pos","neg", expression(paste("PML", alpha,"+"))))

Edit: In response to follow-up question posted, here is the solution for using label_parsed for more than one variable. Includes requested space in the variable strings.

df$var2 <- c(rep(c('trt a','trt b'), NROW(df)/2),'trt a')
df$var2 <- factor(df$var2, levels=c('trt a','trt b'), ordered=T, labels=c(expression(paste("trt ", alpha)), expression(paste("trt ", beta))))

ggplot(df,aes(x=var2, y=value)) + geom_boxplot() + 
  facet_wrap(~var2, ncol = 5, scales = "free_x", labeller = label_parsed)

Fix the x-axis:

ggplot(df,aes(x=var2, y=value)) + geom_boxplot() + 
  facet_wrap(~var2, ncol = 5, scales = "free_x", labeller = label_parsed) + 
  scale_x_discrete(name="",
                 breaks = c(expression(paste("trt ", alpha)), expression(paste("trt ", beta))),
                 labels = c(expression(paste("trt ", alpha)), expression(paste("trt ", beta))))