I have a variety of SymPy expressions involving UndefinedFunction instances:
f = Function('f')
g = Function('g')
e = f(x) / g(x)
How can I obtain a list of the function invocations appearing in such expressions?  In this example, I'd like to get [f(x), g(x)].
I'm aware of free_symbols but it kicks back set([x]) (as it should).
You are right that you want to use atoms, but be aware that all functions in SymPy subclass from Function, not just undefined functions. So you'll also get
>>> (sin(x) + f(x)).atoms(Function)
set([f(x), sin(x)])
So you'll want to further reduce your list to only those functions that are UndefinedFunctions. Note that UndefinedFunction is the metaclass of f, so do to this, you need something like
>>> [i for i in expr.atoms(Function) if isinstance(i.__class__, UndefinedFunction)]
[f(x)]
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