I am moving away from using SQL Authentication with my Azure DB, to Active Directory Managed Authentication as explained in this article.
Basically, I'm doing two main things to get this working.
1- injecting the token in the DBContext constructor:
public MyDBContext(DbContextOptions<MyDBContext> options)
    : base(options)
{
    var conn = (SqlConnection)Database.GetDbConnection();
    conn.AccessToken = (new Microsoft.Azure.Services.AppAuthentication.AzureServiceTokenProvider()).GetAccessTokenAsync("https://database.windows.net/").Result;
}
2- In My Web App Startup file, I'm injecting the DBContext
    string SqlConnection = localConfig["SqlConnectionString"];
    services.AddDbContext<MyDBContext>(options => options.UseSqlServer(SqlConnection, sqlServerOptions => { sqlServerOptions.CommandTimeout(1000); }));
My problem now is that every time I need to refresh the model using the Scaffold-DbContext command, my MyDbContext gets overwritten, and I lose the changes I've done to the constructor. 
What solutions are possible to avoid this problem? OR, is there a better way to inject the Token somewhere else efficiently?
Edit: Please note that I am using EF 2.x
I've used an interceptor to inject access tokens:
public class ManagedIdentityConnectionInterceptor : DbConnectionInterceptor
{
    private readonly bool _useManagedIdentity;
    private readonly AzureServiceTokenProvider _tokenProvider;
    public ManagedIdentityConnectionInterceptor(bool useManagedIdentity)
    {
        _useManagedIdentity = useManagedIdentity;
        _tokenProvider = new AzureServiceTokenProvider();
    }
    public override async Task<InterceptionResult> ConnectionOpeningAsync(
        DbConnection connection,
        ConnectionEventData eventData,
        InterceptionResult result,
        CancellationToken cancellationToken = default)
    {
        if (_useManagedIdentity)
        {
            // In Azure, get an access token for the connection
            var sqlConnection = (SqlConnection)connection;
            var accessToken = await GetAccessTokenAsync(cancellationToken);
            sqlConnection.AccessToken = accessToken;
        }
        return result;
    }
    private async Task<string> GetAccessTokenAsync(CancellationToken cancellationToken)
    {
        // Get access token for Azure SQL DB
        var resource = "https://database.windows.net/";
        return await _tokenProvider.GetAccessTokenAsync(resource, cancellationToken: cancellationToken);
    }
}
Which can be added like this:
// Detect environment somehow (locally you might not want to use tokens)
var useManagedIdentity = true;
var managedIdentityInterceptor = new ManagedIdentityConnectionInterceptor(useManagedIdentity);
services.AddDbContext<Context>(options => options.UseSqlServer(connectionString).AddInterceptors(managedIdentityInterceptor));
This way no changes are needed in the constructor. The interceptor will get a token before a connection is opened to the SQL DB. Also we avoid doing sync-over-async in the constructor. Do note this requires EF Core 3.x.
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